Notebooks in. Desktop apps out.
Build and test your workflow in a Jupyter notebook. LabConstrictor turns it into a desktop app that colleagues can install and run without setting up Python.


See it in action
See how installation works
Step through a simulated installer for Windows or macOS, from the downloaded file to opening the app. Nothing is downloaded or installed.Try the installation demoExplore an installed app
Preview the Welcome notebook and a real NucleiSky example as colleagues see them in an installed app. No analysis runs here; the results were computed in advance.Open the installed appMake your workflow available in other software
Your notebook is still the main interface. If the workflow would also be useful in napari, Fiji or QuPath, you can make it available through our plugins.
Explore the ecosystemFeatured apps
CellTracksColabAnalysisCompile, visualise and analyse cell tracking data across fields of view, biological repeats and conditions.DesktopColabv1.1.5 · 22 October 2026
NucleiSkyAnalysisAlign microscopy images in 2D and 3D by matching the geometry of nuclei, like stars in a constellation.DesktopColabpip
napari plugin: experimental
Fiji plugin: experimental
QuPath plugin: experimentalv0.1.5 · 10 November 2026
VLab4MicSimulationA virtual lab to simulate fluorescence microscopy images, from molecular structures to acquisition, with no coding.DesktopColab
napari plugin: experimental
Fiji plugin: experimentalv0.1.7 · 15 October 2026
Cite LabConstrictor
If you use LabConstrictor in your research, please cite the project to support its development:
Iván Hidalgo-Cenalmor, Marcela Xiomara Rivera Pineda, Bruno M. Saraiva, Ricardo Henriques, and Guillaume Jacquemet. Packaging Jupyter notebooks as installable desktop apps using LabConstrictor. arXiv preprint, 2026. doi:10.48550/arXiv.2603.10704
Read the preprintEach app page says what its authors ask you to cite.